probably in matlab
On Fri, 20 Apr 2012, Anthony Dick wrote:
Thanks Bruce. What's the easiest way to "paste" those labels. Manually
through tkmedit, or through the command line?
Anthony
On 4/20/12 3:53 PM, Bruce Fischl wrote:
HI Anthony
I would make sure to include an entire brain labeling in the training set.
You can do this by pasting your manual labels into our aseg of the subjects
in question.
cheers
Bruce
On Fri, 20 Apr 2012, Anthony Dick wrote:
Hello,
I developed a new atlas for parcellating the cerebellum, based on 20
brains manually segmented by Jörn Diedrichsen, which he was kind enough
to share (note these also formed the basis for his 2009 paper in
Neuroimage (46; 39-46).
I got the segmentation to work, but I would not say it works well. As
you can see from the attached image, it is not ready for prime-time. On
the left is the brain of subject 1, manually segmented. On the right is
the brain of the same subject with the automated sementation, based on
the developed atlas.
My question is, how can I improve it? I realize this is an open question
and potentially difficult to answer without some probing, but this is a
resource I think a lot of users would like to have access to, so perhaps
it is worth the effort.
Anthony
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