Hi Maria - Do you at any point get the following warning?
"WARN: CVS template is not unavailable in the current version"
Thanks,
a.y
On Wed, 20 Jun 2012, Maria Gemzicka wrote:
Hi,
I run -corr and -intra with no errors. -inter finishes without errors if
does not use doregcvs.
When I want to use cvs for registration, I get error:
iterating
done with candidates
Active BCs = 91494
Total BCs = 548640
no-eqs = 245610
surf2vol(26656) malloc: *** mmap(size=295714816) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Out of memory. This could be due to allocating
[0]PETSC ERROR: too large an object or bleeding by not properly
[0]PETSC ERROR: destroying unneeded objects.
[0]PETSC ERROR: Memory allocated 0 Memory used by process 0
[0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info.
[0]PETSC ERROR: Memory requested 295714444!
trac-all.error in scripts:
......
PROCESSOR x86_64
OS Darwin
Darwin shemp.mri.yorku.ca 11.4.0 Darwin Kernel Version 11.4.0: Mon Apr 9
19:32:15 PDT 2012; root:xnu-1699.26.8~1/RELEASE_X86_64 x86_64
$Id: trac-preproc,v 1.17.2.5 2011/05/20 06:51:51 ayendiki Exp $
/Users/Maria/Applications/freesurfer/bin/trac-preproc
PWD /Users/Maria
CMD mri_cvs_register --mov mgFS6 --template cvs_avg35 --outdir
/Users/maria/Desktop/mgFS/mgFS6/dmri/xfms/cvs
Thank you.
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