Oops, that's a typo, meant "is unavailable". In any case something like
this should show up early in the logs.
On Wed, 20 Jun 2012, Bruce Fischl wrote:
"not unavailable"????
On Wed, 20 Jun 2012, Anastasia Yendiki wrote:
Hi Maria - Do you at any point get the following warning?
"WARN: CVS template is not unavailable in the current version"
Thanks,
a.y
On Wed, 20 Jun 2012, Maria Gemzicka wrote:
> Hi,
> I run -corr and -intra with no errors. -inter finishes without errors if
> does not use doregcvs.
> When I want to use cvs for registration, I get error:
>
> iterating
>
> done with candidates
>
> Active BCs = 91494
>
> Total BCs = 548640
>
> no-eqs = 245610
>
> surf2vol(26656) malloc: *** mmap(size=295714816) failed (error code=12)
>
> *** error: can't allocate region
>
> *** set a breakpoint in malloc_error_break to debug
>
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
>
> [0]PETSC ERROR: Out of memory. This could be due to allocating
>
> [0]PETSC ERROR: too large an object or bleeding by not properly
>
> [0]PETSC ERROR: destroying unneeded objects.
>
> [0]PETSC ERROR: Memory allocated 0 Memory used by process 0
>
> [0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info.
>
> [0]PETSC ERROR: Memory requested 295714444!
>
>
>
> trac-all.error in scripts:
>
>
> ......
>
> PROCESSOR x86_64
>
> OS Darwin
>
> Darwin shemp.mri.yorku.ca 11.4.0 Darwin Kernel Version 11.4.0: Mon Apr
> 9
> 19:32:15 PDT 2012; root:xnu-1699.26.8~1/RELEASE_X86_64 x86_64
>
> $Id: trac-preproc,v 1.17.2.5 2011/05/20 06:51:51 ayendiki Exp $
>
> /Users/Maria/Applications/freesurfer/bin/trac-preproc
>
> PWD /Users/Maria
>
> CMD mri_cvs_register --mov mgFS6 --template cvs_avg35 --outdir
> /Users/maria/Desktop/mgFS/mgFS6/dmri/xfms/cvs
>
>
> Thank you.
>
>
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