Hi Ed, when I created the cache, I only went up to 30mm FWHM thinking that no one would ever go above it, or maybe should never go above it. I can create tables at higher smoothing levels, but 34mm is a lot of smoothing. How much did you apply to the data? doug
On 09/27/2012 05:48 AM, Ed Gronenschild wrote: > Hi, > > I want to apply a cluster correction with mri_glmfit-sim with > the --cache option: > > mri_glmfit-sim --glmdir my_glmdir --cache 1.3 abs > > It fails with the error message that it can't find the file: > > FSDir/average/mult-comp-cor/fsaverage/lh/cortex/fwhm34/abs/th1.3/mc- > z.csd > > (FSDir is the directory where FreeSurfer is located, > version 5.0.0, Mac OSX10.5) > > Looking at the content of the ....fsaverage/lh/cortex directory > than indeed, only the directories fwhm01, fwhm02, ..., fwhm30 > are present. > > In the log file from mri_glmfit I can read that the residualFWHM > is 34.005014. Since this FWHM is automatically derived by > mri_glmfit, does it mean that I can never use the --cache option > in this case? > > Cheers, > Ed > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
