I have download the latest verion of mri_segstats from the release
notes. But it does not generate asegstats.
4 x86_64 x86_64 GNU/Linux
#--------------------------------------------
#@# ASeg Stats Tue Oct 2 07:36:17 CEST 2012
/home/knutjb/freesurfer/20_ucsd_automatic_version2/004
mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv
mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent
--subcortgray --in mri/norm.mgz --in-intensity-name norm
--in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray
--ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject 004
ERROR: Option --sum unknown
#------------------------------------------
recon-all -s 004 finished without error at Tue Oct 2 07:36:17 CEST 2012
done
knutjb@dmed4960:~/freesurfer/20_ucsd_automatic_version2$ mri_segstats
USAGE: mri_label2vol
Possible inputs:
--label labelid <--label labelid>
--annot annotfile : surface annotation file
--seg segpath : segmentation
--aparc+aseg : use aparc+aseg.mgz in subjectdir as seg
--temp tempvolid : output template volume
--reg regmat : VolXYZ = R*LabelXYZ
--regheader volid : label template volume (needed with --label or
--annot)
for --seg, use the segmentation volume
--identity : set R=I
--invertmtx : Invert the registration matrix
--fillthresh thresh : between 0 and 1 (def 0)
--labvoxvol voxvol : volume of each label point (def 1mm3)
--proj type start stop delta
--subject subjectid : needed with --proj or --annot
--hemi hemi : needed with --proj or --annot
--surf surface : use surface instead of white
--o volid : output volume
--hits hitvolid : each frame is nhits for a label
--label-stat statvol : map the label stats field into the vol
--stat-thresh thresh : only use label point where stat > thresh
--offset k : add k to segmentation numbers (good when 0 should not
be ignored)
--native-vox2ras : use native vox2ras xform instead of tkregister-style
--version : print version and exit
--help
$Id: mri_label2vol.c,v 1.39 2012/06/08 17:29:54 greve Exp $
knutjb@dmed4960:~/freesurfer/20_ucsd_automatic_version2$ mri_segstats --sum
ERROR: Option --sum unknown
Knut J
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