Hi Knut, when did you download mri_segstats? Can you send me the result of mri_segstats --all-info doug
On 10/02/2012 01:42 AM, Knut J Bjuland wrote: > I have download the latest verion of mri_segstats from the release > notes. But it does not generate asegstats. > > > 4 x86_64 x86_64 GNU/Linux > #-------------------------------------------- > #@# ASeg Stats Tue Oct 2 07:36:17 CEST 2012 > /home/knutjb/freesurfer/20_ucsd_automatic_version2/004 > > mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv > mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent > --subcortgray --in mri/norm.mgz --in-intensity-name norm > --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray > --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject 004 > > ERROR: Option --sum unknown > > #------------------------------------------ > > recon-all -s 004 finished without error at Tue Oct 2 07:36:17 CEST 2012 > done > > knutjb@dmed4960:~/freesurfer/20_ucsd_automatic_version2$ mri_segstats > USAGE: mri_label2vol > > Possible inputs: > --label labelid<--label labelid> > --annot annotfile : surface annotation file > --seg segpath : segmentation > --aparc+aseg : use aparc+aseg.mgz in subjectdir as seg > > --temp tempvolid : output template volume > > --reg regmat : VolXYZ = R*LabelXYZ > --regheader volid : label template volume (needed with --label or > --annot) > for --seg, use the segmentation volume > --identity : set R=I > --invertmtx : Invert the registration matrix > > --fillthresh thresh : between 0 and 1 (def 0) > --labvoxvol voxvol : volume of each label point (def 1mm3) > --proj type start stop delta > > --subject subjectid : needed with --proj or --annot > --hemi hemi : needed with --proj or --annot > --surf surface : use surface instead of white > > --o volid : output volume > --hits hitvolid : each frame is nhits for a label > --label-stat statvol : map the label stats field into the vol > --stat-thresh thresh : only use label point where stat> thresh > --offset k : add k to segmentation numbers (good when 0 should not > be ignored) > > --native-vox2ras : use native vox2ras xform instead of tkregister-style > --version : print version and exit > --help > > $Id: mri_label2vol.c,v 1.39 2012/06/08 17:29:54 greve Exp $ > > knutjb@dmed4960:~/freesurfer/20_ucsd_automatic_version2$ mri_segstats --sum > ERROR: Option --sum unknown > > > > Knut J > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
