I've tried to set the matlab installation path, into the tcsh path (where my FS_HOME is), but It's not working. I have no idea how to change this on the startup.m, can you help me with it?
Regards,
Gabriel
El 16/10/12, Marie Schaer <marie.sch...@unige.ch> escribió:
Gabriel,
If I am correct, your path (fsmatlab) is pointing to the matlab folder of freesurfer distribution (I.e. Including the matlab scripts) whereas it should point to the matlab installation directory.
You can check using the command getmatlab.
Let me know,
Marie
On 16 oct. 2012, at 16:02, Gabriel Gonzalez Escamilla <ggon...@upo.es> wrote:
> Dear FS experts
>
> I'm trying to run the "recon-all -s subjid -localGI" in both terminal and matlab, and neither of them is working.
> I'm using currently version of FS and matlab R2009b.
>
> the following error alwais apair:
>
> INFO: FreeSurfer build stamps do not match
> Subject Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v4.2.0
> Current Stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> INFO: SUBJECTS_DIR is /root/trabajo/freesurfer/subjects
> Actual FREESURFER_HOME /root/trabajo/freesurfer
> -rwxr-xr-x 1 root root 6867734 Oct 16 15:23 /root/trabajo/freesurfer/subjects/c_Macarena/scripts/recon-all.log
> Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006 x86_64 x86_64 x86_64 GNU/Linux
> /root/trabajo/freesurfer/subjects/c_Macarena/surf
> #--------------------------------------------
> #@# Local Gyrification Index lh Tue Oct 16 15:24:31 CEST 2012
>
> mris_compute_lgi --i lh.pial
>
> ERROR: Matlab is required to run mris_compute_lgi!
> Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006 x86_64 x86_64 x86_64 GNU/Linux
>
> recon-all -s c_Macarena exited with ERRORS at Tue Oct 16 15:24:31 CEST 2012
>
>
>
>
> Matlab exist on the startup.m file as:
>
> %------------ FreeSurfer -----------------------------%
> fshome = getenv('FREESURFER_HOME');
> fsmatlab = sprintf('%s/root/trabajo/freesurfer/matlab',fshome);
> path(path,fsmatlab);
> clear fshome fsmatlab;
> %-----------------------------------------------------%
>
>
> Can anyone help me on this?
>
> Best Regards,
> Gabriel
>
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--
--------------------------
PhD. student Gabriel González-Escamilla
Laboratory of Functional Neuroscience
Department of Physiology, Anatomy, and Cell Biology
University Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Seville
- Spain -
Email: ggon...@upo.es
http://www.upo.es/neuroaging/es/
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