Hi FS community, I was trying to view the results of the hippocampal subfield segmentation but had trouble overlaying the subfields on the nu.mgz file. I tried letting it run for a while but it still does not work. Below I have included the commands I used in Terminal:
[dyn-128-59-230-112:subjects/bert/mri] learninglab2% freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz -p-labels posterior_right_* posterior_Right-Hippocampus.mgz -p-prefix posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt 2012-11-27 19:18:38.964 freeview.bin[20154:607] invalid drawable 2012-11-27 19:18:38.969 freeview.bin[20154:607] invalid drawable 2012-11-27 19:18:38.987 freeview.bin[20154:607] invalid drawable 2012-11-27 19:18:38.989 freeview.bin[20154:607] invalid drawable 2012-11-27 19:18:39.006 freeview.bin[20154:607] invalid drawable 2012-11-27 19:18:39.008 freeview.bin[20154:607] invalid drawable 2012-11-27 19:18:39.025 freeview.bin[20154:607] invalid drawable 2012-11-27 19:18:39.027 freeview.bin[20154:607] invalid drawable QObject::connect: Connecting from QAbstractButton::toggled(bool) to COMPAT slot (QGroupBox::setShown(bool)) QObject::connect: Connecting from QAbstractButton::toggled(bool) to COMPAT slot (QGroupBox::setShown(bool)) CTABrgbAtIndexi: index -1 was OOB CTABrgbAtIndexi: index -1 was OOB Can not find index for color name left_CA2-3 CTABrgbAtIndexi: index -1 was OOB QThread: Destroyed while thread is still running I looked over the mailing list and saw that someone had a similar problem in the past and tried to follow that solution. It did not seem to work for me: [dyn-128-59-230-112:/Applications] learninglab2% cd $FREESURFER_HOME/ [dyn-128-59-230-112:/Applications/freesurfer] learninglab2% sed -i "s/CA2_3/CA2\/3/g" FreeSurferColorLUT.txt sed: 1: "FreeSurferColorLUT.txt": invalid command code F [dyn-128-59-230-112:/Applications/freesurfer] learninglab2% sed -i "s/CA4_DG/CA4\/DG/g" FreeSurferColorLUT.txt sed: 1: "FreeSurferColorLUT.txt": invalid command code F Does anybody know what's going on? Thanks for your help, Juan
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