No, I tried running just one recon and I only have one xterm window open. Anything I can do to fix this?
On Sat, Dec 1, 2012 at 11:11 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > 6G should be plenty. Do you have anything else running? Maybe another > recon at the same time? > On Fri, 30 Nov 2012, Negar Memarian wrote: > > Hi Bruce, >> I have 8 GB ram and have assigned 6GB of it to FreeSurfer. Shall I >> increase >> it to 8? Would that be enough or still too low? >> >> Thank you, >> Negar >> >> >> On Fri, Nov 30, 2012 at 7:31 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> Look like it is running out of memory. How much ram do you have >> on that machine? >> Bruce >> >> >> >> On Nov 30, 2012, at 9:29 PM, Negar Memarian >> <negar.memar...@utoronto.ca> wrote: >> >> > Hello, >> > >> > I ran recon-all -all on my subject. The process ended after >> several minutes with this message at the end: >> > recon-all -s 350_FS exited with ERRORS at Fri Nov 30 17:57:59 >> PST 2012 >> > >> > I tried loading the pial and white surfaces for editing using >> this command: >> > tkmedit 350_FS brainmask.mgz rh.white -aux-surface lh.white >> > >> > but looks like these surfaces do not exist (since the >> recon-all exited prematurely). When I check the recon-all.log >> file I do not see any errors except a few MCSRCH errors. So I >> cannot understand what exactly went wrong in the recon-all. I've >> attached the recon-all log file. Can someone please tell me what >> the problem is and how I can fix it? >> > >> > Many thanks, >> > Negar >> > p.s. I tried on more than one subject and I still face the >> same issue. >> > >> > >> > Negar Memarian, MASc, PhD >> > NSERC Postdoctoral Fellow >> > Department of Neurology >> > David Geffen School of Medicine at UCLA >> > >> > <recon-all.log> >> > ______________________________**_________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person >> to whom it is >> addressed. If you believe this e-mail was sent to you in error >> and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent >> to you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> >>
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