Thank you for your reply, Bruce. I'm running FreeSurfer using a VMWare virtual machine on Windows 7. I've set the settings of the VM to use 2 CPUs and 6GB ram. Here is the specifications of my computer hardware: OS: Windows 7 professional Processor: Intel Core i7-3770 CPU @ 3.40 GHz RAM: 8 GB System type: 64 bit
Please let me know if you need any other info. Many thanks for your help. -Negar On Sat, Dec 1, 2012 at 11:52 AM, Bruce Fischl <[email protected]>wrote: > can you check to see how much you actually have free? You are definitely > running out of memory, so something else is using it. What is your > hardware/software environment? > > On Sat, 1 Dec 2012, Negar Memarian wrote: > > No, I tried running just one recon and I only have one xterm window open. >> Anything I can do to fix this? >> >> >> >> On Sat, Dec 1, 2012 at 11:11 AM, Bruce Fischl <[email protected] >> > >> wrote: >> 6G should be plenty. Do you have anything else running? Maybe >> another recon at the same time? >> On Fri, 30 Nov 2012, Negar Memarian wrote: >> >> Hi Bruce, >> I have 8 GB ram and have assigned 6GB of it to >> FreeSurfer. Shall I increase >> it to 8? Would that be enough or still too low? >> >> Thank you, >> Negar >> >> >> On Fri, Nov 30, 2012 at 7:31 PM, Bruce Fischl >> <[email protected]> >> wrote: >> Look like it is running out of memory. How >> much ram do you have >> on that machine? >> Bruce >> >> >> >> On Nov 30, 2012, at 9:29 PM, Negar Memarian >> <[email protected]> wrote: >> >> > Hello, >> > >> > I ran recon-all -all on my subject. The >> process ended after >> several minutes with this message at the end: >> > recon-all -s 350_FS exited with ERRORS at >> Fri Nov 30 17:57:59 >> PST 2012 >> > >> > I tried loading the pial and white surfaces >> for editing using >> this command: >> > tkmedit 350_FS brainmask.mgz rh.white >> -aux-surface lh.white >> > >> > but looks like these surfaces do not exist >> (since the >> recon-all exited prematurely). When I check >> the recon-all.log >> file I do not see any errors except a few >> MCSRCH errors. So I >> cannot understand what exactly went wrong in >> the recon-all. I've >> attached the recon-all log file. Can someone >> please tell me what >> the problem is and how I can fix it? >> > >> > Many thanks, >> > Negar >> > p.s. I tried on more than one subject and I >> still face the >> same issue. >> > >> > >> > Negar Memarian, MASc, PhD >> > NSERC Postdoctoral Fellow >> > Department of Neurology >> > David Geffen School of Medicine at UCLA >> > >> > <recon-all.log> >> > >> ______________________________**_________________ >> > Freesurfer mailing list >> > [email protected] >> > >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/** >> freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended >> only for the person >> to whom it is >> addressed. If you believe this e-mail was sent >> to you in error >> and the e-mail >> contains patient information, please contact >> the Partners >> Compliance HelpLine at >> >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If >> the e-mail was sent >> to you in error >> but does not contain patient information, >> please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> >> >> >>
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