Hi Nick

I reran dicom import from /usr/local/freesurfer/subject/sample*. I had 24254940 kB free memory but I still got a segmentation error.I used sample data from /usr/local/freesurfer/subject. Do you think it is a glibc bug in Fedora 18. It contain glibc-2.16-28.fc18.x86_64.


This error showed up in my dmesg log.

[ 175.413292] mri_convert[1350]: segfault at 0 ip 00000037e092fbda sp 00007fff0a9dc2c8 error 4 in libc-2.16.so[37e0800000+1ad000]


Knutj



On 29. jan. 2013 19:47, Nick Schmansky wrote:
Knut,

I noticed in the log that there was only 284KB of free memory available,
which is not enough to run freesurfer, although it would seem like it
should be enough to run the mri_convert command.  Can you free-up more
memory and re-run?   Also, I noticed that you're running the Centos6
build, what OS are you running? Fedora 18?  Does the v5.2 Centos4
freesurfer build work on that?

Nick

On Tue, 2013-01-29 at 19:30 +0100, Knut J Bjuland wrote:
When I run recon-all using freesurfer 5.2 latest beta it will segment
crash.

Linux mypc 3.7.4-204.fc18.x86_64 #1 SMP Wed Jan 23 16:44:29 UTC 2013
x86_64 x86_64 x86_64 GNU/Linux
/home/knutjbj/freesurfer/ernie

   mri_convert /usr/local/freesurfer/subjects/sample-001.mgz
/home/knutjbj/freesurfer/ernie/mri/orig/001.mgz

mri_convert /usr/local/freesurfer/subjects/sample-001.mgz
/home/knutjbj/freesurfer/ernie/mri/orig/001.mgz
Segmentation fault
Linux super-knut 3.7.4-204.fc18.x86_64 #1 SMP Wed Jan 23 16:44:29 UTC
2013 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s ernie exited with ERRORS at ti. 29. jan. 19:25:15 +0100 2013

For more details, see the log file
/home/knutjbj/freesurfer/ernie/scripts/recon-all.log
To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

Knut J
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Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer



The information in this e-mail is intended only for the person to whom it is
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Tue Jan 29 20:26:29 CET 2013
/home/knutjbj/freesurfer/ernie
/usr/local/freesurfer/bin/recon-all
-i /usr/local/freesurfer/subjects/sample-001.mgz -i /usr/local/freesurfer/subjects/sample-002.mgz -s ernie
subjid ernie
setenv SUBJECTS_DIR /home/knutjbj/freesurfer
FREESURFER_HOME /usr/local/freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0
Linux super-knut 3.7.4-204.fc18.x86_64 #1 SMP Wed Jan 23 16:44:29 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  1024 
memorylocked 64 kbytes
maxproc      192659 
maxlocks     unlimited
maxsignal    192659 
maxmessage   819200 
maxnice      0 
maxrtprio    0 
maxrttime    unlimited

             total       used       free     shared    buffers     cached
Mem:      24683456     455644   24227812          0      66580      77648
-/+ buffers/cache:     311416   24372040
Swap:     49337340          0   49337340

########################################
program versions used
$Id: recon-all,v 1.379.2.54 2013/01/15 22:31:19 nicks Exp $
$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $
mri_convert -all-info 
ProgramName: mri_convert  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
FLIRT version 5.5
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
mri_convert --version 
stable5
ProgramName: tkregister2_cmdl  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
ProgramName: mri_make_uchar  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_watershed  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_gcut  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_segment  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_label2label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_label2label.c,v 1.40.2.1 2011/05/19 17:21:56 greve Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 


 ======= NUMBER OF OPENMP THREADS = 1 ======= 
ProgramName: mri_em_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:29-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_em_register.c,v 1.84.2.2 2012/10/30 19:16:52 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_ca_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_ca_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_ca_register.c,v 1.78.2.2 2012/11/14 22:03:02 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_pretess  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_fill  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_tessellate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_concatenate_lta  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_normalize_tp2  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_smooth  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_inflate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_curvature  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_sphere  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_fix_topology  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:30-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_topo_fixer  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_euler_number  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_make_surfaces  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_make_surfaces.c,v 1.127.2.3 2012/11/07 19:57:28 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_volmask  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_anatomical_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mrisp_paint  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_curvature_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mris_calc  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mris_calc.c,v 1.37.2.7 2012/08/15 21:47:25 mreuter Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
$Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $

ProgramName: mri_robust_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
$Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $

ProgramName: mri_robust_template  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:31-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_and  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:32-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_or  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:32-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_fuse_segmentations  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:32-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: mri_segstats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2013/01/29-19:26:32-GMT  BuildTimeStamp: Jan 17 2013 00:19:38  CVS: $Id: mri_segstats.c,v 1.75.2.8 2013/01/15 17:04:14 greve Exp $  User: root  Machine: super-knut  Platform: Linux  PlatformVersion: 3.7.4-204.fc18.x86_64  CompilerName: GCC  CompilerVersion: 40400 
#######################################
GCADIR /usr/local/freesurfer/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR /usr/local/freesurfer/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
/home/knutjbj/freesurfer/ernie

 mri_convert /usr/local/freesurfer/subjects/sample-001.mgz /home/knutjbj/freesurfer/ernie/mri/orig/001.mgz 

mri_convert /usr/local/freesurfer/subjects/sample-001.mgz /home/knutjbj/freesurfer/ernie/mri/orig/001.mgz 
Linux super-knut 3.7.4-204.fc18.x86_64 #1 SMP Wed Jan 23 16:44:29 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s ernie exited with ERRORS at Tue Jan 29 20:26:33 CET 2013

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
MemTotal:       24683456 kB
MemFree:        24254940 kB
Buffers:           43212 kB
Cached:            76744 kB
SwapCached:            0 kB
Active:            48956 kB
Inactive:          81928 kB
Active(anon):      12800 kB
Inactive(anon):     7580 kB
Active(file):      36156 kB
Inactive(file):    74348 kB
Unevictable:           0 kB
Mlocked:               0 kB
SwapTotal:      49337340 kB
SwapFree:       49337340 kB
Dirty:                 8 kB
Writeback:             0 kB
AnonPages:         10924 kB
Mapped:            12664 kB
Shmem:              9468 kB
Slab:              42436 kB
SReclaimable:      20808 kB
SUnreclaim:        21628 kB
KernelStack:        1360 kB
PageTables:         1216 kB
NFS_Unstable:          0 kB
Bounce:                0 kB
WritebackTmp:          0 kB
CommitLimit:    61679068 kB
Committed_AS:      42084 kB
VmallocTotal:   34359738367 kB
VmallocUsed:      391340 kB
VmallocChunk:   34359336576 kB
HardwareCorrupted:     0 kB
AnonHugePages:         0 kB
HugePages_Total:       0
HugePages_Free:        0
HugePages_Rsvd:        0
HugePages_Surp:        0
Hugepagesize:       2048 kB
DirectMap4k:       79360 kB
DirectMap2M:    25077760 kB
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

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