Hi Jon that means that one of the surfaces is out of date, usually because you edited and reran but not to completion. Try running
recon-all -s <subject> -make all cheers Bruce p.s. ignore the "can't find file" thing. It really means it tried to read it, but found it wasn't the same topology as the other surface and that's what it is complaining about On Fri, 1 Feb 2013, Jonathan Holt wrote: > Experts, > > Having an issue with this error. It's complaining about rh.pial not matching > rh.white, indicates there's no such file or directory and that > mrisReadTriangleFile failed, and then proceeds to load without rh.pial. I > tried loading rh.pial manually, but upon loading it immediately removes every > surface on the LH. Wasn't an issue before I ran recon-all. Worth noting this > brain was generated from a particularly low contrast MRI scan, and freesurfer > had trouble generating correct surfaces from the get go. > > Jon > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
