Hi Sophie
what template do you mean? You can't rerun the subcortical segs or
parcellations since they depend on manual labelings. You could regenerate
our cortical folding patterns atlas, but I don't think that buys you much
since the atlas you would build is by definition in register with our
current one (if it wasn't you wouldn't be able to use our cortical
parcellations)
cheers
Bruce
On Fri, 15 Feb 2013, Sophie Maingault wrote:
Hello Freesurfer experts !
I created a new template with make_average_subject called 80tvs and I would
like to re-run some of my subjects with this new template. I can?t find the
command line in FAQ. Is it for example : recon-all ?all ?s t0001 ?target
80tvs ?? So I need the repertory of this new template in the subject_dir ?
Thank you for the answer !
Sophie
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