The first cmd (mris_register, or use the surfreg script) will create a new registration file in subject/surf. Make sure you don't overwrite the original one (?h.sphere.reg). mris_preproc will just create a single output file with all of your subjects' thickness data (unless you use --qcache) doug
On 02/18/2013 05:58 AM, Sophie Maingault wrote: > > Hello, > > Thank you for your answer. I found this page : > http://surfer.nmr.mgh.harvard.edu/fswiki/SurfaceRegAndTemplates > > So I have to do the point “Creating a registration template > initialized with FreeSurfer template (DG)” : first the command > mris-register –curv and then mris_preproc –surfreg ? But what type of > file it will create ? In the directory surf ? It will change the > parcellation ? > > Cheers > > Sophie > > ------------------------------------------------------------------------ > > *De :*freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] *De la p**art > de*Douglas Greve > *Envoyé :* vendredi 15 février 2013 18:02 > *À :* freesurfer@nmr.mgh.harvard.edu > *Objet :* Re: [Freesurfer] Recon-all with my own template > > > You can also register your subjects to the new average subject > (creates a new spherical registragtion). Use the surfreg script (run > with --help for more info). > doug > > On 2/15/13 8:55 AM, Bruce Fischl wrote: > >> Hi Sophie >> >> what template do you mean? You can't rerun the subcortical segs or >> parcellations since they depend on manual labelings. You could >> regenerate our cortical folding patterns atlas, but I don't think >> that buys you much since the atlas you would build is by definition >> in register with our current one (if it wasn't you wouldn't be able >> to use our cortical parcellations) >> >> >> cheers >> Bruce >> >> >> On Fri, 15 Feb 2013, Sophie Maingault wrote: >> >> >> >> Hello Freesurfer experts ! >> >> >> >> I created a new template with make_average_subject called 80tvs and I >> would >> like to re-run some of my subjects with this new template. I can?t >> find the >> command line in FAQ. Is it for example : recon-all ?all ?s t0001 ?target >> 80tvs ?? So I need the repertory of this new template in the >> subject_dir ? >> >> >> >> Thank you for the answer ! >> >> >> >> Sophie >> >> >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
