Gari, This is definitely an XQuartz issue. Have you rebooted your system since installing XQuartz? Does /opt/X11/lib/libGLU.1.dylib exist? In my experience, installing XQuartz can be a finicky process that sometimes requires at least one reboot and a logout/login. If rebooting doesn't solve your issue I would completely uninstall XQuartz:
sudo rm -rf /System/Library/Launch*/org.x.* sudo rm -rf /Applications/Utilities/XQuartz.app sudo rm -rf /opt/X11 sudo rm /usr/X11 sudo rm /usr/X11R6 and reinstall XQuartz, and reboot! I wrote a short wiki page that troubleshoots various freesurfer GUI issues on Mac Snow Leopard: http://surfer.nmr.mgh.harvard.edu/fswiki/qdec_snowleopard -Zeke > Update: tkmedit 5.1 is working with Xquartz installed in Snow Leopard, > tkmedit 5.2 is not working again. > > Any suggestion? > > thanks, > Gari > > > On Tue, Mar 12, 2013 at 1:16 PM, Garikoitz Lerma-Usabiaga < > gariko...@gmail.com> wrote: > >> Hi FS experts, >> I just installed 5.2 for Snow Leopard in a machine who already had 5.1. >> >> When running tkmedit in 5.1 X11 works well, but when running it from 5.2 >> it gives the following error: >> >> BRODMANN80:~ glerma$ tkmedit bert T1.mgz >> dyld: Library not loaded: /opt/X11/lib/libGLU.1.dylib >> Referenced from: /Users/glerma/Apps/freesurfer/tktools/tkmedit.bin >> Reason: image not found >> Trace/BPT trap >> >> >> I've seen in the mail list that when this happens, Xquartz should be >> installed. >> >> But, is it a requirement for freesurfer 5.2 in Snow Leopard to run with >> Xquartz? Should I remove X11 and install Xquartz then? (it may affect >> other >> programs and I am reluctant to do it...) >> >> Many thanks, >> Gari >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
