Hi Nick, Truncated the email. I'm getting a license error for both the mri_convert command and the tkmedit command that you provided. The original also yields a license error (no segfault). You are right, my earlier test called tkmedit.bin directly.
Thanks Nick On 05/08/2013 12:07 PM, Nick Schmansky wrote: > Nick, > > Hi, I found what might the source of the problem and posted new versions > of mri_convert and tkmedit.bin to this directory: > > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ > > before trying the new mri_convert though, can you try the following? > > cd <some writable directory> > mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz > > I'm guessing it will segfault or print the license problem. > > Now copy the new mri_convert (from the ftp link above) to the > freesurfer/bin directory and try again. It should work. You can then > also try the new tkmedit.bin. Remember to copy the tkmedit.bin to the > freesurfer/tktools directory and leave freesurfer/bin/tkmedit untouched > (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs, so > tkmedit.bin cannot be run directly) > > Thanks, > > Nick > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
