Nicola and Nick, Hi, its Nick (the other Nick :)). This looks like a new issue we haven't seen before that is specific to opensuse. Can you try downloading the file libcrypt.so.1 from this location:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ copy it to your freesurfer/lib dir, then set a lib path prior to setting-up (sourcing) freesurfer, like this: setenv FREESURFER_HOME <whereever you installed freesurfer> setenv LD_LIBRARY_PATH $FREESURFER_HOME/lib source $FREESURFER_HOME/SetUpFreeSurfer.csh this libcrypt lib is from centos6, and i'm thinking that possibly opensuse implements crypt differently (working theory anyway). you can confirm that mri_convert is using this new lib by typing: cd $FREESURFER_HOME/bin ldd ./mri_convert and you should see libcrypt in the list with a path to the freesurfer/lib dir. Nick > Hi Nick (Schmansky), > > sorry to jump back in on this thread - I have exactly the same issue > (license file not valid) on the same OS (and not on others) with *all* > fs commands. I have tried multiple license files from other working > installations. > > Is there anything else i can try? > > Thanks a lot > > nicola > > On 5/8/2013 3:09 PM, Nick Schmansky wrote: >> Nick >> >> Can you email me the .license file that is being used? >> >> Thanks, >> >> N. >> >> >> On Wed, 2013-05-08 at 13:21 -0500, Nick Jones wrote: >>> Hi Nick, >>> >>> Truncated the email. I'm getting a license error for both the >>> mri_convert command and the tkmedit command that you provided. The >>> original also yields a license error (no segfault). You are right, my >>> earlier test called tkmedit.bin directly. >>> >>> Thanks >>> >>> Nick >>> >>> On 05/08/2013 12:07 PM, Nick Schmansky wrote: >>>> Nick, >>>> >>>> Hi, I found what might the source of the problem and posted new >>>> versions >>>> of mri_convert and tkmedit.bin to this directory: >>>> >>>> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ >>>> >>>> before trying the new mri_convert though, can you try the following? >>>> >>>> cd <some writable directory> >>>> mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz >>>> >>>> I'm guessing it will segfault or print the license problem. >>>> >>>> Now copy the new mri_convert (from the ftp link above) to the >>>> freesurfer/bin directory and try again. It should work. You can then >>>> also try the new tkmedit.bin. Remember to copy the tkmedit.bin to the >>>> freesurfer/tktools directory and leave freesurfer/bin/tkmedit >>>> untouched >>>> (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs, >>>> so >>>> tkmedit.bin cannot be run directly) >>>> >>>> Thanks, >>>> >>>> Nick >>>> >>>> >>>> >>> >> >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
