Thanks Nick, well that did change something... here is what i get now with any fs command:
/bin/tcsh: /lib64/libfreebl3.so: version `NSSRAWHASH_3.12.3' not found (required by /work2/rootbackup/usr/local/freesurfer/lib/libcrypt.so.1) Should I update/substitute /lib64/libfreebl3.so al well? thanks a lot, Nicola PS when running ldd ./mri_convert inside the bin dir, I get "not a dynamic executable" On 05/09/2013 06:02 AM, Nick Schmansky wrote: > Nicola and Nick, > > Hi, its Nick (the other Nick :)). This looks like a new issue we haven't > seen before that is specific to opensuse. Can you try downloading the > file libcrypt.so.1 from this location: > > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ > > copy it to your freesurfer/lib dir, then set a lib path prior to > setting-up (sourcing) freesurfer, like this: > > setenv FREESURFER_HOME <whereever you installed freesurfer> > setenv LD_LIBRARY_PATH $FREESURFER_HOME/lib > source $FREESURFER_HOME/SetUpFreeSurfer.csh > > this libcrypt lib is from centos6, and i'm thinking that possibly opensuse > implements crypt differently (working theory anyway). > > you can confirm that mri_convert is using this new lib by typing: > > cd $FREESURFER_HOME/bin > ldd ./mri_convert > > and you should see libcrypt in the list with a path to the freesurfer/lib > dir. > > Nick > > >> Hi Nick (Schmansky), >> >> sorry to jump back in on this thread - I have exactly the same issue >> (license file not valid) on the same OS (and not on others) with *all* >> fs commands. I have tried multiple license files from other working >> installations. >> >> Is there anything else i can try? >> >> Thanks a lot >> >> nicola >> >> On 5/8/2013 3:09 PM, Nick Schmansky wrote: >>> Nick >>> >>> Can you email me the .license file that is being used? >>> >>> Thanks, >>> >>> N. >>> >>> >>> On Wed, 2013-05-08 at 13:21 -0500, Nick Jones wrote: >>>> Hi Nick, >>>> >>>> Truncated the email. I'm getting a license error for both the >>>> mri_convert command and the tkmedit command that you provided. The >>>> original also yields a license error (no segfault). You are right, my >>>> earlier test called tkmedit.bin directly. >>>> >>>> Thanks >>>> >>>> Nick >>>> >>>> On 05/08/2013 12:07 PM, Nick Schmansky wrote: >>>>> Nick, >>>>> >>>>> Hi, I found what might the source of the problem and posted new >>>>> versions >>>>> of mri_convert and tkmedit.bin to this directory: >>>>> >>>>> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ >>>>> >>>>> before trying the new mri_convert though, can you try the following? >>>>> >>>>> cd <some writable directory> >>>>> mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz >>>>> >>>>> I'm guessing it will segfault or print the license problem. >>>>> >>>>> Now copy the new mri_convert (from the ftp link above) to the >>>>> freesurfer/bin directory and try again. It should work. You can then >>>>> also try the new tkmedit.bin. Remember to copy the tkmedit.bin to the >>>>> freesurfer/tktools directory and leave freesurfer/bin/tkmedit >>>>> untouched >>>>> (its a wrapper-script that sets-up paths to the tcl/tk/tix/blt libs, >>>>> so >>>>> tkmedit.bin cannot be run directly) >>>>> >>>>> Thanks, >>>>> >>>>> Nick >>>>> >>>>> >>>>> >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
