it needs to be: mris_make_surfaces -dura memprage_echo%d.mgz 4 subjid lh
note the "4" which tells it how many echoes to read On Thu, 9 May 2013, Jonathan Holt wrote: > I input: > > mris_make_surfaces -dura memprage_echo%d.mgz subjid lh > > it returns: > > detecting dura using 0 echos from memprage_echo%d.mgz > > > Should I execute the command in the same directory as the mgz's? Should they > be set up or placed in a specific directory? I also, as with recon-all, > exported the proper subject directory beforehand. > > > On May 9, 2013, at 10:37 AM, Bruce Fischl wrote: > >> can you send me the full command line? It should say 4 echoes, not 0 >> On Thu, 9 May 2013, Jonathan Holt wrote: >> >>> Thanks Bruce, >>> >>> should the hemisphere's be processed separately, or how do I signify lh and >>> rh simultaneously? >>> >>> Also, should the fact that after running mris_make_surfaces, it says >>> "detecting dura using 0 echos from memprage_echo%d.mgz" be worrisome? I've >>> got 4 different echos, all mgzs in the directory. I have a feeling I'm >>> doing this incorrectly. >>> >>> jon >>> On May 9, 2013, at 8:50 AM, Bruce Fischl wrote: >>> >>>> Hi Jon >>>> >>>> yes, the subject and hemi need to be defined (they are required parameters) >>>> Bruce >>>> On Wed, 8 May 2013, Jonathan Holt wrote: >>>> >>>>> Hi all, >>>>> combed through the mail archives to figure out how to work with multi echo >>>>> mprage, found what I need but I wanted to confirm which of these two >>>>> commands is the appropriate >>>>> mris_make_surfaces -dura memprage_echo%d.mgz 4 subjid lh/rh >>>>> mris_make_surfaces -dura memprage_echo%d.mgz do the subjid and >>>>> hemispheres need to be specified as per the 1st line? >>>>> jon >>>>> >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>>> error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
