Hi Siddharth
what FS version are you running? I did fix this recently, and the fix is
certainly in 5.3. It only happened if there was something badly wrong, like
the norm.mgz being empty for example, so it was more a symptom of an
earlier failure then a problem of it's own (although I did have it print
out an error message instead of running forever)
cheers
Bruce
On Thu, 16 May 2013, Ray,
Siddharth wrote:
Hi,
I am new to freesurfer and was trying to run it on couple of my subjects but
I am stuck (for last 40 hrs) at stage
“mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta
/home/sray2/Desktop/combirx/cr052_ip_output/mri/transforms/cc_up.lta
cr052_ip_output”
it seems. The last few lines of the log file were:
searching scale 1 Z rot 9.9
searching scale 1 Z rot 10.1 global minimum found at slice 122.0, rotations
(-3.99, 3.36)
final transformation (x=122.0, yr=-3.992, zr=3.355):
0.996 -0.059 -0.069 25.704;
0.058 0.998 -0.004 -3.212;
0.070 0.000 0.998 -51.078;
0.000 0.000 0.000 1.000;
Have anyone came across this error before ? and know how to fix this. Please
let me know.
Thanks in advance.
~Siddharth Ray
P.S. I have attached the log file here.
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