what is is labled? On 05/28/2013 01:42 PM, Gonzalo Rojas Costa wrote: > Hi Doug: > > I use the instructions that you told me... But, why I get the gray > colored region (red arrow) ?... > > Sincerely, > > > Gonzalo Rojas Costa > > >> Message: 15 >> Date: Mon, 27 May 2013 22:41:41 -0400 >> From: Douglas Greve <gr...@nmr.mgh.harvard.edu> >> Subject: Re: [Freesurfer] white matter volume per lobe... >> To: freesurfer@nmr.mgh.harvard.edu >> Message-ID: <51a41965.6050...@nmr.mgh.harvard.edu> >> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >> >> you will need to run mri_annotation2label and specify the output to be >> an annotation file instead of a segmentation. Then you will have to run >> mri_aparc2aseg, specifying your lobes annotation as well as --labelwm >> (look in the recon-all.log file for an example of how wmparc.mgz is >> created). Then run mri_segstats (you can also get an example from the >> recon-all.log file). >> doug > -- > Gonzalo Rojas Costa > Laboratory for Advanced Medical Image Processing > Department of Radiology > Clínica las Condes > Lo Fontecilla 441, Las Condes, Santiago, Chile. > Tel: 56-2-2105170 > Cel: 56-9-97771785 > www.clc.cl
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
