Hi Doug: But, in the mri_aparc2aseg command, I test with the "--wmparc-dmax 200" option... I put that big value to test it, but I got the image that I sent you...
Sincerely, Gonzalo Rojas Costa On Thu, May 30, 2013 at 12:06 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > It is probably the region that is more than 5mm away from cortex. In the > wmparc it should be labeled as wm-lh-unknown > > doug > > > On 05/30/2013 11:27 AM, Gonzalo Rojas Costa wrote: >> >> Hi Doug: >> >> I used the instructions that you told me to get the white matter per >> each lobule... But, I got the grey colored region (red arrow)... Which >> neuroanatomical area is ?... >> >> Sincerely, >> >> >> Gonzalo Rojas Costa >> >> >>> Message: 15 >>> Date: Mon, 27 May 2013 22:41:41 -0400 >>> From: Douglas Greve <gr...@nmr.mgh.harvard.edu> >>> Subject: Re: [Freesurfer] white matter volume per lobe... >>> To: freesurfer@nmr.mgh.harvard.edu >>> Message-ID: <51a41965.6050...@nmr.mgh.harvard.edu> >>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed >>> >>> you will need to run mri_annotation2label and specify the output to be >>> an annotation file instead of a segmentation. Then you will have to run >>> mri_aparc2aseg, specifying your lobes annotation as well as --labelwm >>> (look in the recon-all.log file for an example of how wmparc.mgz is >>> created). Then run mri_segstats (you can also get an example from the >>> recon-all.log file). >>> doug >> >> -- >> Gonzalo Rojas Costa >> Laboratory for Advanced Medical Image Processing >> Department of Radiology >> Clínica las Condes >> Lo Fontecilla 441, Las Condes, Santiago, Chile. >> Tel: 56-2-2105170 >> Cel: 56-9-97771785 >> www.clc.cl > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
