mgh format can be volume or surface. fscalc will work with either. it will also work with nifti or analize formats
On 05/30/2013 05:44 PM, Subhabrata Chaudhury wrote: > Hello Doug, > Thank you. Will fscalc work with volume mask ? You wrote .mgh. mgh is > surface data, right ? > Best wishes > Subha > >> ----- Original Message ----- >> >> From: Douglas N Greve >> >> Sent: 05/30/13 05:40 PM >> >> To: freesurfer@nmr.mgh.harvard.edu >> >> Subject: Re: [Freesurfer] combining masks in freesurfer ?? >> >> you can use >> fscalc mask1.mgh and mask2.mgh -o mask1-and-mask2.mgz >> assuming you want to use an AND function >> doug >> >> On 05/30/2013 05:18 PM, Subhabrata Chaudhury wrote: >> > Hi All, >> > Is there a way to combine multiple binary volumetric masks into a >> > single binary volumetric mask in freesurfer ? >> > Please let me know. >> > Thankyou >> > Subha >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
