Hi Fatma
this not what we meant. From here please run:
cd ..
ls -l s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere
cheers
Bruce
On Wed, 10 Jul 2013, fatma
zribi wrote:
---------- Forwarded message ----------
From: fatma zribi <zribi.fa...@gmail.com>
Date: 2013/7/10
Subject: Re: [Freesurfer] Fwd: how to use mris_register?
To: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Copie1/s000_open_brain_sanlm_+TIR_normlalized$ ls -l
total 704
drwxrwxr-x 2 zribi.f scalp 4096 Jul 5 17:12 bem
drwxrwxr-x 2 zribi.f scalp 4096 Jul 2 10:49 label
drwxrwxr-x 4 zribi.f scalp 4096 Jul 5 17:12 mri
drwxrwxr-x 2 zribi.f scalp 4096 Jul 9 10:44 scripts
drwxrwxr-x 2 zribi.f scalp 4096 Jul 2 10:49 SD
drwxrwxr-x 2 zribi.f scalp 4096 Jul 5 17:12 src
drwxrwxr-x 2 zribi.f scalp 4096 Jul 5 17:12 stats
drwxrwxr-x 6 zribi.f scalp 4096 Jul 9 10:44 surf
drwxrwxr-x 2 zribi.f scalp 4096 Jul 5 17:12 tmp
drwxrwxr-x 2 zribi.f scalp 4096 Jul 5 17:12 touch
drwxrwxr-x 2 zribi.f scalp 4096 Jul 5 17:12 trash
2013/7/10 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
I meant can you run it and send us the results? If we can't open the file
it is not an FS issue, but something with
the file system. Run ls -l with the same path that you are giving
mris_register
Bruce
On Wed, 10 Jul 2013, fatma zribi wrote:
Hi Bruce,
Yes i can run ls -l in the directory
2013/7/10 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Hi Fatma
are you sure you don't have a typo in the path? Can you run
ls -l on that file?
Bruce
On Wed, 10 Jul 2013, fatma zribi wrote:
---------- Forwarded message ----------
From: fatma zribi <zribi.fa...@gmail.com>
Date: 2013/7/10
Subject: Re: [Freesurfer] how to use mris_register?
To: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Hi Bruce,
Thank you very much for your help but it still don't
work.
mris_register
s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere
avg_all_subjects_SD/lh.reg.template.tif lh.sphere_reg
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks
Exp $
$Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks
Exp $
reading surface from
s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere...
MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere): could not open
file
No such file or directory
mris_register: could not read surface file
s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere
No such file or directory
note that the file exist in the folder and i have
changed the SUBJECT_DIR to the appropriate
folder
Thank you very much for your help
with best regards,
Fatma
2013/7/9 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Hi Fatma
don't use the -1 flag if you are regtering to a
template, only if you are registering
individual
surfaces to each
other. You probably want the output to be named
lh.sphere_reg and go in the s000/surf
dir.
cheers
Bruce
On Tue, 9 Jul 2013, fatma zribi wrote:
Dear Mr,
When I execute mris_register to register
one subject to a template., I have this
message of
error:
mris_register -1 s000/surf/lh.sphere
avg_all_subjects_SD/lh.reg.template.tif
sphere_reg
treating target as a single subject's
surface...
$Id: mris_register.c,v 1.59 2011/03/02
00:04:33 nicks Exp $
$Id: mrisurf.c,v 1.693.2.2 2011/04/27
19:21:05 nicks Exp $
reading surface from
s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere...
MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere): could not open
file
No such file or directory
mris_register: could not read surface file
s000/surf/lh.sphere
No such file or directory
note that the file exist in the specifeid
SUBJECT_DIR
Thank you for your help
Fatma
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