Hi Claudia if you run autorecon2 you will rerun the aseg, which will use the control points to change the subcortical intensity normalization. If you don't want that to happen, you need to run -autorecon2-cp
cheers Bruce On Wed, 24 Jul 2013, Claudia Dacquino wrote: > Dear Freesurfers,we recently processed a sample of adult patients and then we > reran autorecon-2 and > autorecon-3 after editing contol points, white matter and pial surface. > We exported the asegstat table both pre and post editing, and we got > different volumes for most of the > subjects. > How is that possible, given that the kind of editing we performed is not > supposed to affect subcortical > segmentation? > Thanks a lot. > Claudia > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
