Thanks Bruce, but I'm sure I ran autorecon2-cp autorecon3: recon-all -autorecon2-cp -autorecon3 -subjid.
However, is it ok to use aseg values post editing even if they look different from the pre editing ones? Thanks a lot. Claudia 2013/7/24 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > Hi Claudia > > if you run autorecon2 you will rerun the aseg, which will use the control > points to change the subcortical intensity normalization. If you don't want > that to happen, you need to run -autorecon2-cp > > cheers > Bruce > > > On Wed, 24 Jul 2013, Claudia Dacquino wrote: > > Dear Freesurfers,we recently processed a sample of adult patients and >> then we reran autorecon-2 and >> >> autorecon-3 after editing contol points, white matter and pial surface. >> We exported the asegstat table both pre and post editing, and we got >> different volumes for most of the >> subjects. >> How is that possible, given that the kind of editing we performed is not >> supposed to affect subcortical >> segmentation? >> Thanks a lot. >> Claudia >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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