Hello, Is it possible to run recon-all without modifying the size of the input MRI volume?
I have in input a volume [181x217x181], and all the steps of recon-all save it in a [256x256x256] volume. I tried skipping all the first steps to avoid this behavior (recon-all -all -nomotioncor -nonuintensitycor -notalairach) but it still re-interpolates my volume... For what I have to do, it would really help me if I can avoid this re-interpolation + padding. If this can't be done, can the output volumes be cropped to the desired size, while keeping the correspondence MRI/surfaces? Thanks, Francois -- François Tadel, MSc MEG / McConnell Brain Imaging Center / MNI / McGill University 3801 rue University, Montreal, QC H3A2B4, Canada _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
