You can always convert the 256^3 back to the native space with mri_vol2vol or mri_label2vol doug
On 7/24/13 8:34 PM, François Tadel wrote: > Hello, > > Is it possible to run recon-all without modifying the size of the input > MRI volume? > > I have in input a volume [181x217x181], and all the steps of recon-all > save it in a [256x256x256] volume. > I tried skipping all the first steps to avoid this behavior (recon-all > -all -nomotioncor -nonuintensitycor -notalairach) but it still > re-interpolates my volume... For what I have to do, it would really > help me if I can avoid this re-interpolation + padding. > > If this can't be done, can the output volumes be cropped to the desired > size, while keeping the correspondence MRI/surfaces? > > Thanks, > Francois > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
