Hi Katie, can you run it with -debug as the first arg and send me the copious terminal output? doug
On 08/30/2013 01:53 PM, Kathryn Devaney wrote: > Hi Doug & Surfers, > > I'm having this same issue. I'm running funcroi-table-sess on two > analyses (lh and rh). There was no 'log' folder in my working directory, > so I created it. Everythingran fine for the lh, but when I try to run > it in the rh I get > > set: Variable name must begin with a letter > > Here's the output of 'bugr' on my machine: > > --------------------------------------------------------------------- > > FREESURFER_HOME: /scratch/local/pkg/freesurfer/freesurfer-5.1.0 > > Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 > > RedHat release: Fedora release 17 (Beefy Miracle) > > Kernel info: Linux 3.6.3-1.fc17.x86_64 x86_64 > > --------------------------------------------------------------------- > > Let me know if you'd like me to send the terminal output of > funcroi-table-sess -debug > > Thanks! > Katie > > > > On 8/19/13 4:05 PM, Douglas N Greve wrote: >> Is there a folder called "log" in the directly you are running it from? >> If not, try creating one. If so, then >> run it with -debug as the first arg and send me the terminal output. >> >> doug >> >> >> On 08/19/2013 02:07 PM, Joseph Andreano wrote: >>> Hi All, >>> >>> I'm trying to use funcroi-table-sess, but whenever I send this command: >>> >>> funcroi-table-sess -roi l_amyg_test -analysis habit_concat.mni305 >>> -contrast neg1Vfix -sf subjects.lst -o l_amyg_neg1Vfix.dat >>> >>> I get this error: >>> >>> set: Variable name must begin with a letter >>> >>> So far as I can tell, all the variables in that command begin with a >>> letter. Any idea what the problem might be? >>> >>> >>> _________________________________ >>> >>> Joseph M. Andreano, PhD >>> Postdoctoral Researcher >>> Interdisciplinary Affective >>> Science Laboratory >>> Massachusetts General Hospital >>> _________________________________ >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
