Hi, there,
I am running the hippocampal subfield segmentation on a high resolution T2 data
that only covers the bilateral hippocampus and nearby temporal lobe areas.
Following the instruction on this webpage:
http://ftp.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldSegmentation
I used the command
recon-all -s my subject -all -hippo-subfields
It was running well, however, it halted/paused after it displayed the following
information:"final transformation (x=..,yr=..,zr=..) and a 4x4 matrix".
For a week it is not going anywhere and not producing any output.
The computer I was running it on had sufficient computational resources and a
Fedora linux system. It does not seem to be related to the configuration of the
computer.
Has anyone ever encountered this problem?? Any diagnostic advice will be
appreciated!!
-Irene
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