Hi Irene,
two things:
1. Can you please send us the log files of the recon?
2. The command you executed will compute the subfield segmentation based
only on the T1, not the high-res T2.
Cheers,
/Eugenio
On 10/01/2013 04:30 PM, Irene Lee wrote:
Hi, there,
I am running the hippocampal subfield segmentation on a high
resolution T2 data that only covers the bilateral hippocampus and
nearby temporal lobe areas.
Following the instruction on this webpage:
http://ftp.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldSegmentation
I used the command
recon-all -s my subject -all -hippo-subfields
It was running well, however, it halted/paused after it displayed the
following information:"final transformation (x=..,yr=..,zr=..) and a
4x4 matrix".
For a week it is not going anywhere and not producing any output.
The computer I was running it on had sufficient computational
resources and a Fedora linux system. It does not seem to be related to
the configuration of the computer.
Has anyone ever encountered this problem?? Any diagnostic advice will
be appreciated!!
-Irene
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Juan Eugenio Iglesias, PhD
http://www.jeiglesias.com
igles...@nmr.mgh.harvard.edu
Athinoula A. Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, Massachusetts 2129
U.S.A.
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