Hi Christiane,
What do you mean when you say that you get the old path with getmatlab? In any case, the error seems not related to a matlab path issue. Can you please attach the entire log? Marie On Nov 18, 2013, at 12:03 AM, "Jockwitz, Christiane" <c.jockw...@fz-juelich.de<mailto:c.jockw...@fz-juelich.de>> wrote: Dear Freesurfer experts, I tried to run the local GI command recon-all –s –localGI and got the following error message: >> ??? Undefined function or method 'make_outer_surface' for input arguments of type 'char'. >From earlier post I tried to fix the problem by changing the matlabpath like >this: setenv MATLABPATH /directory/bin > setenv PATH ${MATLABPATH}/bin:${PATH} However, if I then check the path via „getmatlab“ I still get the old path. Did I do something wrong? And is it right to set up my matlabpath to the matlab/bin folder? The scripts like make_outer_surface.m are located in the freesurfer/matlab directory. Or does the path have to point to the scripts directly? Thank you very much in advance Kind regards, Christiane ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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