please send the command line without variables
On 05/28/2014 02:02 PM, Ben Mooneyham wrote:
> Hi all,
>
> I'm trying to transform a mean functional image into subject (T1)
> space using mri_vol2vol. Originally, my code worked successfully, but
> in attempts to re-run the procedure, both on the same data and on
> additional data, I've encountered an error in which the log reports an
> "ERROR: Option unknown" and also "--o: command not found."
>
> I am hoping to resolve this issue; does anyone see where my issue is
> arising from? This is especially strange given that I've gotten it to
> work before, and I don't think I made any changes to the script
> besides changing the directory locations for different subjects' data.
>
> Here is the mri_vol2vol command as I currently have it:
>
> mri_vol2vol --reg ${iSub}_bbregister.dat --mov
> ${iSub}_Tempfiltered_mean.nii --targ
> ${DataDir}/S1/${iSub}/${iSub}_brainmask.gcuts.nii \
> --o ${iSub}_mean_epi_inT1.nii
>
> The cd is ${DataDir}/S1/${iSub} , which contains the
> ${iSub}_bbregister.dat , ${iSub}_Tempfiltered_mean.nii , and
> ${iSub}_brainmask.gcuts.nii files.
>
> Thanks for your help,
>
> Ben Mooneyham
>
> --
> Graduate Student
> UCSB - Department of Psychological & Brain Sciences
> Building 429 Room 102
> (210) 912-6076
> bwmooney...@gmail.com <mailto:bwmooney...@gmail.com>
>
>
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