Hi Bruce, Sorry, I wasn¹t clear. It¹s great to know that the FreeSurfer is very flexible. I meant to obtain the aseg individual label files in MNI152 space as NIfTI files, for example, the different parts of the CC.
Could you please point me to the right direction, as to what tool I should use for this purpose (preferably a command line tool, rather than a visualization tool)? Best, Daniel On 6/15/14, 10:16 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >Hi Daniel >Any of our tools can write nifti if you give the output volume the >extension .nii or .nii.gz > > >Cheers >Bruce > >> On Jun 15, 2014, at 5:54 PM, "Yang, Daniel" <yung-jui.y...@yale.edu> >>wrote: >> >> Dear all, >> >> While it is possible to obtain NIfTI files for cortical parcellation >>using mri_annotation2label, I am running if it is possible to obtain >>NIfTI files associated with aseg parts? >> >> Thanks! >> Daniel >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >The information in this e-mail is intended only for the person to whom it >is >addressed. If you believe this e-mail was sent to you in error and the >e-mail >contains patient information, please contact the Partners Compliance >HelpLine at >http://www.partners.org/complianceline . If the e-mail was sent to you in >error >but does not contain patient information, please contact the sender and >properly >dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
