mri_vol2vol with the transforms/talairach.xfm as the transform should do the trick. Make sure that the resample type is nearest neighbor
Cheers Bruce > On Jun 15, 2014, at 10:28 PM, "Yang, Daniel" <[email protected]> wrote: > > Hi Bruce, > > Sorry, I wasn¹t clear. It¹s great to know that the FreeSurfer is very > flexible. I meant to obtain the aseg individual label files in MNI152 > space as NIfTI files, for example, the different parts of the CC. > > Could you please point me to the right direction, as to what tool I should > use for this purpose (preferably a command line tool, rather than a > visualization tool)? > > Best, > Daniel > >> On 6/15/14, 10:16 PM, "Bruce Fischl" <[email protected]> wrote: >> >> Hi Daniel >> Any of our tools can write nifti if you give the output volume the >> extension .nii or .nii.gz >> >> >> Cheers >> Bruce >> >>> On Jun 15, 2014, at 5:54 PM, "Yang, Daniel" <[email protected]> >>> wrote: >>> >>> Dear all, >>> >>> While it is possible to obtain NIfTI files for cortical parcellation >>> using mri_annotation2label, I am running if it is possible to obtain >>> NIfTI files associated with aseg parts? >>> >>> Thanks! >>> Daniel >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> [email protected] >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
