Dear All,
I am sorry to post this again. Any help will be greatly appreciated. I am
struck as I am unable to run the recon-all step.
Thanks
Venkat
---------- Forwarded message ----------
From: Venkateswaran Rajagopalan <venkateswa...@hyderabad.bits-pilani.ac.in>
Date: Fri, Jun 20, 2014 at 5:14 PM
Subject: mpr2mni305 failed, see transforms/talairach_avi.log
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Hi All,
I am getting the the following error when I run recon-all -subjid E368
-autorecon1
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
Here is what talairach_avi.log says
/home/administrator/Desktop/freesurfer/subjects_dir/E368/mri
/usr/local/freesurfer/bin/talairach_avi
--i orig_nu.mgz --xfm transforms/talairach.auto.xfm
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
Linux administrator-HP-Pro-3330-MT 3.13.0-24-generic #46-Ubuntu SMP Thu Apr
10 19:08:14 UTC 2014 i686 i686 i686 GNU/Linux
Fri Jun 20 17:06:38 IST 2014
mri_convert orig_nu.mgz talsrcimg.img
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from orig_nu.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
writing to talsrcimg.img...
Analyze Output Matrix
-1.000 0.000 0.000 129.000;
0.000 0.000 1.000 -129.000;
0.000 -1.000 0.000 122.500;
0.000 0.000 0.000 1.000;
--------------------
INFO: set hdr.hist.orient to -1
mpr2mni305 talsrcimg
Fri Jun 20 17:06:39 IST 2014
/usr/local/freesurfer/bin/mpr2mni305 talsrcimg
$Id: mpr2mni305,v 1.4 2009/06/03 16:01:38 nicks Exp $
target=711-2C_as_mni_average_305
---------------------------------------------------------------------
analyzeto4dfp talsrcimg -O0 -y
---------------------------------------------------------------------
$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $
Fri Jun 20 17:06:40 2014
Writing: talsrcimg.4dfp.hdr
$Id: analyzeto4dfp.c,v 1.2 2007/05/05 00:00:06 nicks Exp $
Reading: talsrcimg.hdr
header size 348 bytes
hdr.dime.datatype offset=70 value=2
hdr.dime.bitpix offset=72 value=8
hdr.hist.orient offset=252 value=-1
dimensionality 4
dimensions 256 256 256 1
Reading: talsrcimg.img
Writing: talsrcimg.4dfp.img
Writing: talsrcimg.4dfp.ifh
ifh2hdr talsrcimg -r0to255
ori=2
---------------------------------------------------------------------
gauss_4dfp talsrcimg 1.1
---------------------------------------------------------------------
$Id: gauss_4dfp.c,v 1.3 2009/05/15 21:43:46 nicks Exp $
Reading: talsrcimg.4dfp.img
Writing: talsrcimg_g11.4dfp.img
image dimensions 256 256 256 padded to 288 288 288
processing volume 1$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $
Fri Jun 20 17:06:46 2014
Writing: talsrcimg_g11.4dfp.hdr
Writing: talsrcimg_g11.4dfp.ifh
including: talsrcimg.4dfp.img.rec in talsrcimg_g11.4dfp.img.rec
---------------------------------------------------------------------
imgreg_4dfp /usr/local/freesurfer/average/711-2C_as_mni_average_305 none
talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355
---------------------------------------------------------------------
$Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $
imgreg_4dfp:
/usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img read error
/usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img
256 256 256 1
1.000000 1.000000 1.000000
orientation T byte_order littleendian
Reading image:
/usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img
dimensions: 256 256 256
mmppix: 1.0000 -1.0000 -1.0000
center: 128.0000 -129.0000 -129.0000
ERROR: 'imgreg_4dfp /usr/local/freesurfer/average/711-2C_as_mni_average_305
none talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355'
failed! status=255
ERROR: mpr2mni305 execution aborted
Any help will be greatly appreciated.
Thanks
Venkat
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