Hi Bruce, Thanks very much. I will wait for Avi Synder's response.
Thanks a lot Venkat On Sat, Jun 21, 2014 at 8:23 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Venkat > > I'll cc Avi Snyder. Avi: do you know what this error message means? > > thanks > Bruce > > > On Sat, 21 Jun 2014, Venkateswaran Rajagopalan wrote: > > Dear All, >> >> I am sorry to post this again. Any help will be greatly appreciated. I am >> struck as I am unable to run the recon-all step. >> >> Thanks >> Venkat >> >> ---------- Forwarded message ---------- >> From: Venkateswaran Rajagopalan <venkateswa...@hyderabad.bits- >> pilani.ac.in> >> Date: Fri, Jun 20, 2014 at 5:14 PM >> Subject: mpr2mni305 failed, see transforms/talairach_avi.log >> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> >> >> Hi All, >> >> I am getting the the following error when I run recon-all -subjid E368 >> -autorecon1 >> >> ERROR: mpr2mni305 failed, see transforms/talairach_avi.log >> >> Here is what talairach_avi.log says >> >> /home/administrator/Desktop/freesurfer/subjects_dir/E368/mri >> /usr/local/freesurfer/bin/talairach_avi >> --i orig_nu.mgz --xfm transforms/talairach.auto.xfm >> $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ >> Linux administrator-HP-Pro-3330-MT 3.13.0-24-generic #46-Ubuntu SMP Thu >> Apr >> 10 19:08:14 UTC 2014 i686 i686 i686 GNU/Linux >> Fri Jun 20 17:06:38 IST 2014 >> mri_convert orig_nu.mgz talsrcimg.img >> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ >> reading from orig_nu.mgz... >> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 >> i_ras = (-1, 0, 0) >> j_ras = (0, 0, -1) >> k_ras = (0, 1, 0) >> writing to talsrcimg.img... >> Analyze Output Matrix >> -1.000 0.000 0.000 129.000; >> 0.000 0.000 1.000 -129.000; >> 0.000 -1.000 0.000 122.500; >> 0.000 0.000 0.000 1.000; >> -------------------- >> INFO: set hdr.hist.orient to -1 >> mpr2mni305 talsrcimg >> Fri Jun 20 17:06:39 IST 2014 >> /usr/local/freesurfer/bin/mpr2mni305 talsrcimg >> $Id: mpr2mni305,v 1.4 2009/06/03 16:01:38 nicks Exp $ >> target=711-2C_as_mni_average_305 >> >> --------------------------------------------------------------------- >> analyzeto4dfp talsrcimg -O0 -y >> --------------------------------------------------------------------- >> >> $Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ >> Fri Jun 20 17:06:40 2014 >> Writing: talsrcimg.4dfp.hdr >> $Id: analyzeto4dfp.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ >> Reading: talsrcimg.hdr >> header size 348 bytes >> hdr.dime.datatype offset=70 value=2 >> hdr.dime.bitpix offset=72 value=8 >> hdr.hist.orient offset=252 value=-1 >> dimensionality 4 >> dimensions 256 256 256 1 >> Reading: talsrcimg.img >> Writing: talsrcimg.4dfp.img >> Writing: talsrcimg.4dfp.ifh >> ifh2hdr talsrcimg -r0to255 >> ori=2 >> >> --------------------------------------------------------------------- >> gauss_4dfp talsrcimg 1.1 >> --------------------------------------------------------------------- >> >> $Id: gauss_4dfp.c,v 1.3 2009/05/15 21:43:46 nicks Exp $ >> Reading: talsrcimg.4dfp.img >> Writing: talsrcimg_g11.4dfp.img >> image dimensions 256 256 256 padded to 288 288 288 >> processing volume 1$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ >> Fri Jun 20 17:06:46 2014 >> Writing: talsrcimg_g11.4dfp.hdr >> >> Writing: talsrcimg_g11.4dfp.ifh >> including: talsrcimg.4dfp.img.rec in talsrcimg_g11.4dfp.img.rec >> >> --------------------------------------------------------------------- >> imgreg_4dfp /usr/local/freesurfer/average/711-2C_as_mni_average_305 none >> talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355 >> --------------------------------------------------------------------- >> >> $Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ >> imgreg_4dfp: >> /usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img read >> error >> /usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img >> 256 256 256 1 >> 1.000000 1.000000 1.000000 >> orientation T byte_order littleendian >> Reading image: >> /usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img >> dimensions: 256 256 256 >> mmppix: 1.0000 -1.0000 -1.0000 >> center: 128.0000 -129.0000 -129.0000 >> ERROR: 'imgreg_4dfp /usr/local/freesurfer/average/ >> 711-2C_as_mni_average_305 >> none talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355' >> failed! status=255 >> ERROR: mpr2mni305 execution aborted >> >> Any help will be greatly appreciated. >> >> Thanks >> Venkat >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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