Hi Doety yes, that looks pretty bad. Can you tell us about the acquisition? What resolution/field strength/scan type was it?
If you upload the subject we will take a look cheers Bruce On Wed, 9 Jul 2014, Doety Prins wrote: >> Dear freesurfer experts, >> >> I experienced some problems with the segmentation of my T1 scans, as both >> the white surface and the pial surface are placed incorrectly (see attached >> images). This seems to me to be a too big difference with what it should >> look like, that I think could not be fixed with the standard troubleshooting >> strategies. >> >> Do you have any solutions for this? Is it for instance possible to make >> changes to the recon-all script to shift the surfaces? >> >> Thanks in advance, >> >> Doety > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
