Thanks. I can replicate the issue. I’ll look into it. Best, Ruopeng
On Nov 30, 2014, at 12:45 PM, angela.fav...@unipd.it wrote: > thank you for your help > please find attached the annot file > I am using the 5.3 release > > Angela > >> Would it be possible to send us your annoy file? Are you using the latest >> dev version of freeview or the one with 5.3 release? >> >> Best, >> Ruopeng >> >> On Nov 29, 2014, at 4:51 AM, angela.fav...@unipd.it wrote: >> >>> Hi all, >>> I have a problem with freeview and I am not sure about the command line >>> to >>> be used to view a mask. >>> I have created an annot file and I would like to have a picture of the >>> mask in the inflated brain with curvature. However when I use the annot >>> file with tksurfer I am able to do so, but with freeview the brain >>> become >>> all black (not in the mask) when the annot file is used. >>> I have read the freeview manual, but I did not fond help in using >>> freeview >>> with command line. Where can I find some help? >>> >>> the command with tksurfer was: >>> >>> tksurfer fsaverage lh inflated -curv -gray -annot mymask.annot >>> >>> with freeview I tried this: >>> >>> freeview -f >>> fsaverage/surf/lh.inflated:overlay=lh.curv:overlay_threshold=2,5 >>> :annot=mymask.annot -viewport 3d >>> >>> thank you for any help! >>> >>> Angela >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> > <lh.mymap2.annot>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
