Thanks Eugenio, It worked.
On Mon, Dec 1, 2014 at 7:11 PM, Eugenio Iglesias <e.igles...@bcbl.eu> wrote: > Hi Gunjan, > if what you're trying to do is to bring brainmask.mgz to the native voxel > space of your input scan, you can run > mri_convert brainmask.mgz brainmaskResampled.nii.gz -rl input.nii.gz > where input.nii.gz is the scan you fed to FreeSurfer's recon-all (e.g., > recon-all -i input.nii.gz -s .... ) > Cheers, > /Eugenio > > Juan Eugenio Iglesias > Postdoctoral researcher BCBL > www.jeiglesias.com > www.bcbl.eu > > Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer > > > ----- Original Message ----- > From: "Gunjan Gautam" <gunjan.gemin...@gmail.com> > To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> > Sent: Monday, December 1, 2014 2:23:12 PM > Subject: [Freesurfer] Number of slices generated in the brainmask.mgz > > > > > > Hi FreeSurfers, > > brainmask.mgz is generating 256 slides per volume. How can I have control > over it, in terms of generating less number of slides (say 181) per volume? > > Gunjan > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
