Hi Luke you can run -autorecon1 and -autorecon2 if all you care about is the aseg (although we have tools for editing the cortical aseg labels with the surfaces that you will not be able to use in this case)
cheers Bruce On Wed, 10 Dec 2014, [email protected] wrote: > > Hi FS-folks! > > I would like to perform a subcortical segmentation only and I am not sure > which preprocessing steps I would have to perform to achieve this goal. > So far I did always the full monty using reconall -all. Which reconall > stages are needed if only the subcortical segmentation is of interest? > > Best wishes and many thanks for you help! > > Luke > > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
