Dear Bruce!
Thanks a lot for the response. I try to get an idea about the minimal time
needed to get the subcortical volumes.
Best wishes,
Luke
> Re: [Freesurfer] subcortical segmentation only
> Bruce Fischl Wed, 10 Dec 2014 05:22:18 -0800
>
> Hi Luke
>
> you can run -autorecon1 and -autorecon2 if all you care about is the aseg
> (although we have tools for editing the cortical aseg labels with the
> surfaces that you will not be able to use in this case)
>
> cheers
> Bruce
> On Wed, 10 Dec 2014,
> lukas.sch...@ukb.uni-bonn.de wrote:
>
> >
> > Hi FS-folks!
> >
> > I would like to perform a subcortical segmentation only and I am not
sure
> > which preprocessing steps I would have to perform to achieve this goal.
> > So far I did always the full monty using reconall -all. Which reconall
> > stages are needed if only the subcortical segmentation is of interest?
> >
> > Best wishes and many thanks for you help!
> >
> > Luke
> >
> >
> >
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