Try giving it the full path to the label On 01/08/2015 02:17 PM, Salil Soman wrote: > Dear Doug, > > Thank you for your email. I am running into trouble using mri_segstats > - the command you sent (mri_segstats --i lh.thickness --slabel subject > lh lh.BA3a.label --id 1 > --sum table.dat) gave me the error: > > "No such file or directory > mri_segstats: could not open label file lh.BA3a.label" > > I tried substituting a single subject in place of "subject" in the > command you sent I get the same error. > I confirmed that the lh.BA3a.label file is in the label subfolder for > the individual subject. > > I would like to output the volume, thickness, and area for all the > broadman areas (especially 35). Any advice you can provide on how to > do this would be a great help. > > Thank you for all your help. > > Sal > > Date: Thu, 08 Jan 2015 11:37:11 -0500 > From: Douglas N Greve <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> > Subject: Re: [Freesurfer] Possible to generate table of statistics for > specific label? > To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> > Message-ID: <54aeb237.9010...@nmr.mgh.harvard.edu > <mailto:54aeb237.9010...@nmr.mgh.harvard.edu>> > Content-Type: text/plain; charset=windows-1252; format=flowed > > > Yep, you can use somehting like > > mri_segstats --i lh.thickness --slabel subject lh lh.BA3a.label --id 1 > --sum table.dat > > doug > > > On 01/08/2015 08:50 AM, Salil Soman wrote: > > Dear List Members, > > > > Is it possible to generate tables of volume / area / thickness > > information for a specific label that is not included in aparcstats or > > asegstats using command line code in freesurfer (e.g. the broadman > > areas)? If so, could someone point me to the instructions? > > > > Thank you for your time and consideration. > > > > Best wishes, > > > > Sal
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
