QDEC will not produce mean maps for each group. If this is something you want to do, you will need to do it in the command-line group analysis stream. See http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis
On 01/15/2015 05:25 AM, Worker, Amanda wrote: > Hi, > > I am currently only able to open a thickness map for a single subject using > "tksurfer SUBJECT lh inflated". I can use the analysis figures from qdec, but > I'd really like to plot the mean thickness for a particular group to compare > to others visually. Is this possible? > > Thanks, > > Amanda > > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve > <gr...@nmr.mgh.harvard.edu> > Sent: 14 January 2015 23:46 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] Viewing QDEC results in tksurfer > > what is your tksurfer command line? > > On 01/13/2015 07:12 AM, Worker, Amanda wrote: >> Hi, >> >> >> Is it possible to view the results of a qdec analysis (correlation >> with a single continuous group) in tksurfer? I am currently unable to >> open it and I'm getting an error saying "could not open >> file */mri/transforms/talairach.xfm ..no such file or directory" . Is >> this a file that is not created with qdec? >> >> >> I'm also trying to visualise group mean thickness' in different >> colours to allow difference between groups, that are not significant >> in the analysis to be visualised. I cannot find any advice on how to >> do this, is this something it's possible to do using either freeview >> of tksurfer? >> >> >> Thanks, >> >> >> Amanda >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
