Hi FreeSurfer experts,
I am trying to run Longitudinal Two Steps analysis.
In the long_mris_slopes I run the following command:
long_mris_slopes --qdec $SUBJECTS_DIR/qdec/longRRMSP01.qdec.table.dat --meas thickness --hemi lh --do-avg --do-rate --do-pc1 --do-spc --do-stack --do-label --time years --qcache fsaverage/ --sd $SUBJECTS_DIR/
And, after some processing, it appears the error message:
mv ./tmp-P01_TP_lh_thickness_C8c_pE/lh.tmp0000.mgh /analise//P01_TP/surf/lh.long.thickness-spc.fwhm0.fsaverage/.mgh
mv: rename ./tmp-P01_TP_lh_thickness_C8c_pE/lh.tmp0000.mgh to /analise//P01_TP/surf/lh.long.thickness-spc.fwhm0.fsaverage/.mgh: No such file or directory
ERROR 1 : mv ./tmp-P01_TP_lh_thickness_C8c_pE/lh.tmp0000.mgh /analise//P01_TP/surf/lh.long.thickness-spc.fwhm0.fsaverage/.mgh did not work?
In the base folder, /surf, I can find many .mgh archives, for example: lh.long.thickness-spc.fwhm0.mgh (and others with other fwhm smoothing factors). But I can't find any lh.long.thickness....fsaverage files.
I did all the previous processing as it appears in the Longitudinal FS Tutorials. I also tried to run qcache with the base file, but it says it is not necessary, since it is a base file.
Should I run qcache first with each subject / time point before?
Thank you,
Carolina
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