Hi freesurfers, I am hoping to warp an aparc+aseg.mgh file from a subject's freesurfer-processed image to a separate (unprocessed) T1 image on the same subject. I would like to use a purely intensity-based nonlinear volumetric registration to do this, to save time and complication. I understand I can do this if I have a .m3z warp file.
My question is, how can I get this warp file? I have tried using mri_cvs_register with the --step3 option, but that appears to only work after the surface-based registrations have been carried out. I haven't found another tool to do this yet. Are there any ideas? Thank you very much for your time. -David
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