Hello Douglas, I have download the new version of mri_surf2vol you supplied me, and have copied it in the FS5.3 /bin installation files.
But when I tried to launch with my precedent command lines, the error message appeared : *gdiagno = -1Using identity matrix for registration--------------------------------------------------------------------------GNU libc version: 2.19ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: http://surfer.nmr.mgh.harvard.edu/registration.html <http://surfer.nmr.mgh.harvard.edu/registration.html>--------------------------------------------------------------------------gdiagno = -1Using merge volume as templateUsing identity matrix for registrationniiRead(): error opening file /home/fatmike/sebastien/FS5.1/207020_T0/asl/lh.MNI305.asl.nii.gzmri_surf2vol ERROR: reading /home/fatmike/sebastien/FS5.1/207020_T0/asl/lh.MNI305.asl.nii.gz headerMatrix from regfile: 0.998 -0.007 0.018 0.957;-0.013 -0.009 0.997 -17.816;-0.015 -1.001 0.002 -18.550; 0.000 0.000 0.000 1.000;movvol /home/global//fsl50/data/standard/MNI152_T1_2mm.nii.gztargvol /home/fatmike/sebastien/FS5.1/207020_T0/asl/MNI305.asl.nii.gzoutvol /home/fatmike/sebastien/FS5.1/207020_T0/asl/lh.MNI152.asl.nii.gzregfile /home/global//freesurfer5.3//average/mni152.register.datinvert 1tal 0talres 2regheader 0noresample 0interp nearest (0)precision float (3)Gdiag_no -1Synth 0SynthSeed 1427897150Invert!niiRead(): error opening file /home/fatmike/sebastien/FS5.1/207020_T0/asl/MNI305.asl.nii.gz* What shoul I do ? Best regards, Matthieu 2015-03-26 21:27 GMT+01:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: > > That version had a bug. Try this version > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2vol > > On 03/26/2015 12:16 PM, Matthieu Vanhoutte wrote: > > Dear experts, > > > > I have some asl data on fsaverage surface and would like to compute > > them on MNI305 volume. So I executed the commands below, but when > > merging left and right hemispheres it seems that the /--fillribbon > > /option on /MNI305.asl.nii.gz/ output data didn't work for right > > hemisphere : > > > > /mri_surf2vol --surfval lh.fsaverage.asl --fillribbon --identity > > fsaverage --template fsaverage/mri/T1.mgz --hemi lh --o > > lh.MNI305.asl.nii.gz > > > > mri_surf2vol --surfval rh.fsaverage.asl --fillribbon --identity > > fsaverage --merge lh.MNI305.asl.nii.gz --hemi rh --o MNI305.asl.nii.gz/ > > > > What should I have to do ? > > > > Many thanks in advance for helping ! > > > > Best regards, > > > > Matthieu > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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