Hello Douglas, I have downloaded a new license and it successfully runs !
Best regards, Matthieu 2015-03-31 12:39 GMT+02:00 Matthieu Vanhoutte <matthieuvanhou...@gmail.com>: > Hello Douglas, > > I have download the new version of mri_surf2vol you supplied me, and have > copied it in the FS5.3 /bin installation files. > > But when I tried to launch with my precedent command lines, the error > message appeared : > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > *gdiagno = -1Using identity matrix for > registration--------------------------------------------------------------------------GNU > libc version: 2.19ERROR: Systems running GNU glibc version greater than > 2.15 require a newly formatted license file (it's free). Please download > a new one from the following page: > http://surfer.nmr.mgh.harvard.edu/registration.html > <http://surfer.nmr.mgh.harvard.edu/registration.html>--------------------------------------------------------------------------gdiagno > = -1Using merge volume as templateUsing identity matrix for > registrationniiRead(): error opening file > /home/fatmike/sebastien/FS5.1/207020_T0/asl/lh.MNI305.asl.nii.gzmri_surf2vol > ERROR: reading > /home/fatmike/sebastien/FS5.1/207020_T0/asl/lh.MNI305.asl.nii.gz > headerMatrix from regfile: 0.998 -0.007 0.018 0.957;-0.013 -0.009 > 0.997 -17.816;-0.015 -1.001 0.002 -18.550; 0.000 0.000 0.000 > 1.000;movvol /home/global//fsl50/data/standard/MNI152_T1_2mm.nii.gztargvol > /home/fatmike/sebastien/FS5.1/207020_T0/asl/MNI305.asl.nii.gzoutvol > /home/fatmike/sebastien/FS5.1/207020_T0/asl/lh.MNI152.asl.nii.gzregfile > /home/global//freesurfer5.3//average/mni152.register.datinvert 1tal > 0talres 2regheader 0noresample 0interp nearest (0)precision float > (3)Gdiag_no -1Synth 0SynthSeed 1427897150Invert!niiRead(): error > opening file /home/fatmike/sebastien/FS5.1/207020_T0/asl/MNI305.asl.nii.gz* > > What shoul I do ? > > Best regards, > > Matthieu > > > 2015-03-26 21:27 GMT+01:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: > >> >> That version had a bug. Try this version >> >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2vol >> >> On 03/26/2015 12:16 PM, Matthieu Vanhoutte wrote: >> > Dear experts, >> > >> > I have some asl data on fsaverage surface and would like to compute >> > them on MNI305 volume. So I executed the commands below, but when >> > merging left and right hemispheres it seems that the /--fillribbon >> > /option on /MNI305.asl.nii.gz/ output data didn't work for right >> > hemisphere : >> > >> > /mri_surf2vol --surfval lh.fsaverage.asl --fillribbon --identity >> > fsaverage --template fsaverage/mri/T1.mgz --hemi lh --o >> > lh.MNI305.asl.nii.gz >> > >> > mri_surf2vol --surfval rh.fsaverage.asl --fillribbon --identity >> > fsaverage --merge lh.MNI305.asl.nii.gz --hemi rh --o MNI305.asl.nii.gz/ >> > >> > What should I have to do ? >> > >> > Many thanks in advance for helping ! >> > >> > Best regards, >> > >> > Matthieu >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >
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