Thank you Douglas ! Matthieu
2015-04-13 22:13 GMT+02:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: > clusterwise correction is a type of FWE correction. If the FWE you are > using is good enough for you and you want to visualize the results on a > surface, then use mri_vol2surf. If this was done on the SPM template > space, then run the SPM T1 template through recon-all to get the surfaces > > > > > > > On 04/13/2015 11:09 AM, Matthieu Vanhoutte wrote: > > By the mean of SPM, the Biological Parmatring toolbox can do the FWE > > correction and give me results on a glass brain. But I don't have any > > cluster wise corrected P-maps on output. > > > > Or did I miss something ? > > > > Best regards, > > > > Matthieu > > > > 2015-04-13 16:51 GMT+02:00 Douglas Greve <gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>>: > > > > Does the BPM toolbox (what's that?) not give you cluster > > correction? You can try using mri_volcluster with the --grf > > option, but you'll need to know the FWHM. Afterwards you can map > > the result to the surface > > > > > > On 4/13/15 10:46 AM, Matthieu Vanhoutte wrote: > >> Hello Douglas, > >> > >> Thanks but even if I do the clusterwise correction in the volume, > >> I can't get an clusterwise corrected output volume image. The > >> only things I have are the Tmaps that I can threshold if wanted. > >> > >> And I would like to project on fsaverage surface the results of > >> the clusterwise correction in the volume. How could I do ? > >> > >> Best regards, > >> > >> Matthieu > >> > >> 2015-04-13 16:27 GMT+02:00 Douglas Greve > >> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>: > >> > >> If you did the analysis in the volume, then you have to do > >> the clusterwise correction in the volume. > >> > >> > >> On 4/13/15 6:05 AM, Matthieu Vanhoutte wrote: > >>> Dear experts, > >>> > >>> I had to make volumic statistical analysis for the need to > >>> use BPM toolbox. So, I got in the output of this statistical > >>> analysis some volumic Tmaps. > >>> > >>> As I did before some group analysis according to FStutorial, > >>> I would like to apply the same method of Clusterwise > >>> Correction on my volumic Tmaps. I have projected my Tmpas on > >>> fsaverage surface, but don't know if it is possible to apply > >>> multiple comparisons correction on these ? And if it is the > >>> case, how to do it ? > >>> > >>> Thanks in advance for any help you could supply to me ! > >>> > >>> Best regards, > >>> > >>> Matthieu > >>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> The information in this e-mail is intended only for the > >> person to whom it is > >> addressed. If you believe this e-mail was sent to you in > >> error and the e-mail > >> contains patient information, please contact the Partners > >> Compliance HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was > >> sent to you in error > >> but does not contain patient information, please contact the > >> sender and properly > >> dispose of the e-mail. > >> > >> > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
