Hi again, FS6 is not out yet, but hopefully soon. The instructions for the new hippocampal subfield module are here: http://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields Cheers, /Eugenio
Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer ----- Original Message ----- From: "Erik O'Hanlon" <erikohan...@rcsi.ie> To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Sent: Friday, May 8, 2015 3:36:21 PM Subject: Re: [Freesurfer] hippocampal subfields Hi Eugenio, That's brilliant, thanks so much for the quick response. So I will download the v6 code and how do I call the command so that it runs the v6 subfield analysis from the recon_all command? Thanks again for the guidance. Very much appreciated Cheers Erik ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Eugenio Iglesias [e.igles...@bcbl.eu] Sent: 08 May 2015 13:16 To: Freesurfer support list Subject: Re: [Freesurfer] hippocampal subfields Hi Erik, the 6.0 subfield code won't overwrite your 5.3 results, so if you run the 6.0 module on data analyzed with 5.3, both results will co-exist in the MRI directory of each subject. Kind regards, /Eugenio Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer ----- Original Message ----- From: "Erik O'Hanlon" <erikohan...@rcsi.ie> To: freesurfer@nmr.mgh.harvard.edu Sent: Friday, May 8, 2015 2:07:18 PM Subject: [Freesurfer] hippocampal subfields Hi FS experts, I completed an analysis including the hippocampal subfield options using 5.3.0. I understand that the subfield options was then removed and I noticed that the new rev of the subfield code will be ready for the v6 FS update. Can I use this code with my 5.3.0 code and if so what files /dirs will I have to remove and how can I run or rerun it to get the new subfield measures if it's possible. I would really like to obtain the subfield measures and am not sure if I can use the existing measures based on the 5.3.0 code. Any advice would be very much appreciated. Kind regards and thanks in advance Erik Erik O'Hanlon Postdoctoral researcher RCSI Psychiatry Royal College of Surgeons in Ireland Beaumont Road, Beaumont, D9, Ireland T: 8093740 E: erikohan...@rcsi.ie W: www.rcsi.ie RCSI DEVELOPING HEALTHCARE LEADERS WHO MAKE A DIFFERENCE WORLDWIDE _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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